feat: add package pruning system with configurable grace periods

- Implemented automatic pruning of stale packages across all platform sync endpoints (Arch, AUR, Debian, Ubuntu, Fedora, Homebrew, Winget)
- Added `last_seen_at` tracking to mark packages as seen during sync runs and identify inactive packages
- Introduced `PRUNE_GRACE_DAYS` and `PRUNE_HARD_DELETE_DAYS` environment variables for configurable soft-delete and hard-delete thresholds

src/app/api/sync-ubuntu/route.ts

@@ -1,5 +1,6 @@
 import { NextRequest, NextResponse } from 'next/server'
 import { DebianPackageFetcher } from '@/services/debianPackageFetcher'
+import { query } from '@/lib/database/config'
 import { SyncAuth } from '@/lib/sync/auth'
 
 export const dynamic = 'force-dynamic'
@@ -36,7 +37,30 @@ export async function POST(request: NextRequest) {
 
   ;(async () => {
     try {
+      const runStartedAt = new Date()
       await DebianPackageFetcher.fetchUbuntuPackages()
+      // Prune not-seen Ubuntu packages (platform ubuntu)
+      const graceDays = parseInt(process.env.PRUNE_GRACE_DAYS || '0', 10)
+      const cutoff = new Date(runStartedAt.getTime() - (graceDays > 0 ? graceDays : 0) * 24 * 60 * 60 * 1000)
+      await query(
+        `UPDATE packages
+         SET is_active = false
+         WHERE platform_id = $1
+           AND is_active = true
+           AND (last_seen_at IS NULL OR last_seen_at < $2)`,
+        ['ubuntu', cutoff]
+      )
+      const hardDays = parseInt(process.env.PRUNE_HARD_DELETE_DAYS || '0', 10)
+      if (hardDays > 0) {
+        const deleteCutoff = new Date(runStartedAt.getTime() - hardDays * 24 * 60 * 60 * 1000)
+        await query(
+          `DELETE FROM packages
+           WHERE platform_id = $1
+             AND is_active = false
+             AND last_seen_at IS NOT NULL AND last_seen_at < $2`,
+          ['ubuntu', deleteCutoff]
+        )
+      }
       syncStatus.status = 'complete'
     } catch (error) {
       syncStatus.status = 'error'